EMD-54071, CryoEM reconstruction of integrase filament at the lumen of native HIV-1 cores (Singer et al, 2026). See also EMD-54067, EMD-54068, EMD-54070, EMD-55409, EMPIAR-13078.
PDB: 9RMU, SIVtal integrase in complex with RNA stem-loop (focused refinement of the filament repeat unit) (Singer et al, 2026). See also 9RMX.
PDB: 9ONA, Immature HIV-1 CACTD-SP1 lattice with Maturation inhibitor PF-46396 (S) and Inositol hexakisphosphate (IP6) (Zadorozhnyi et al, 2025). See also 9ON8, 9ON9, 9ONB and BMRB entry 31245.
PDB: 9DGQ, Structure of dynein-1 on microtubules (Rao et al, 2026). See also 9DGP, 9DGR, 9DGS, 9DGT, 9DGU, 9DGV, 9YNC, 9YND, 9YNE, 9YNF, 9YNG, 9YNH, and EMDB entries: 46844, 46843, 46845, 46846, 46847, 46848, 46849, 73178, 73179, 73173, 73174, 73178, and 73176.
PDB: 9E14, Full-length human dynein-1 in phi-like comformation bound to a Lis1 dimer under Nde1-Lis1 condition (Yang et al, 2026). See also 9E0Z, 9E10, 9E11, 9E12, 9E13, and EMDB entries: 47381, 47379, 47382, 47380, 47383, 47378.
PDB: 9BMA, Motor domain from full-length human dynein-1 bound to microtubules in apo condition (Chai et al, 2025). See also 9BLY, 9BLZ, 9BM0, 9BM1, 9BM2, 9BM3, 9BM4, 9BM5, 9BM6, 9BM7, 9BM8, 9BMB, 9BMC, 9BMD, 9BMF, 9BMG, 9BMH, 9BMJ, 9BML, 9BMM, 9BMN, 9BMO, 9BMP, 9BMR, 9BMS, 9BMT, 9BMU, 9BMV, 9BMW, 9BMY, 9BMZ, 9BN0, 9BN1, 9BN3, 9BN4, 9BN5, 9BN6, 9DH5, 9DH6, 9DH7, 9DH8, 9DH9, 9DHA and EMDB entries:44681, 44682, 44683, 44684, 44685, 44686, 44687, 44688, 44689, 44690, 44691, 44697, 44698, 44699, 44701, 44702,44703, 44704, 44705, 44706, 46857, 46858, 46859, 46860, 44709, 44710, 44711, 44712, 44714, 44715, 44716, 44717,44718, 44693, 44694, 44695, 44696, 44720, 44721, 44722, 44723.
EMDB-53459, In situ cryo-EM structure of HIV-1 VLP hexamer in the nuclear pore complex (Hou, Frank et al, 2025). See also EMD-54198, EMD-53458,  EMD-53460, EMD-54199.

Related structures are reported in Hou, Shen et al 2025, as EMDB entries: 52888, 52887, 52889, 53083, 53084, 53085, 53086

 
PDB: 9I8I, cryoEM structure of HIV-1 KAKA/G225R mature CA hexamer (Zhu et al, 2025). See also EMDB entries: EMD-51826,  EMD-51825,  EMD-51821, EMD-51822,  EMD-51823, EMD-51824, EMD-52724, EMD-52725, EMD-52726.
PDB: 9CNU, HIV-2 CA hexamer bound with Nup153 peptide; assembled with liposome templating (Cook et al, 2025). See also 9CLJ, 9CNS, 9CNT, 9CNV and EMDB entries: 45676, 45758, 45759, 45760, 45761, 45762, 45763, 47600.
PDB: 9EK3, HIV-1 immature WT matrix protein p17 lattice (Chen et al, 2025). See also 9EK1, 9EK2, and EMDB entries:  51821, 51822, 51823, 51824, 51825, 51826, 52724, 52725, 52726
PDB: 9MKQ, MVV CA Pentamer assembled via liposome templating (Arizaga et al, 2025). See also 9MKP, 9MKR, 9MKS and BMRB entries: 48335, 48333, 48336, EMD-48334.
PDB: 8VBE, Kinetic intermediate states of HIV-1 RT DNA synthesis captured by cryo-EM (Vergera et al, 2024). See also 8VB6, 8VB7, 8VB8, 8VB9, 8VBC, 8VBD, 8VBF, 8VBG, 8VBH, 8VBI, and EMDB entries: 43114, 43115, 43116, 43117, 43120, 43121, 43122, 43123, 43124, 43125, 43126.
PDB: 9B4W, 4F-Trp labeled Oscillatoria Agardhii Agglutinin (OAA) (Runge et al, 2024). See also 9AUQ, 9B4V and BMRB entries 31152 and 31153.
PDB: 9E39, Gag CA-SP1 (T8I) immature lattice bound with Bevirimat from enveloped virus like particles (Wu et al, 2025). See also 9CWV, 9D6C, 9D6E, 9D88, 9DWD, 9P9L, 9P9M and EMDB entries: 45975, 46593, 47240, 47475, 46631, 71417, 46595, 71418. 
PDB: 9JA0, The capsid protein of HIV 1 resolved using monodispersed streptavidin affinity CryoEM (Ma et al, 2024). See also 8X7T, 8X7U, 9JA1, and EMDB entries: 61286, 38109, 38110, 38112, 38113, 38114, 38115, 38116, 38117, 38118 , 38111, 38119, 38120, 38121, 38122, 38123, 38124, 38125, 38126, 38127, 61287.
PDB: 8CBV, HIV-1 integrase catalytic core domain and C-terminal domain in complex with allosteric integrase inhibitor MUT916 (Bonnard et al, 2023). See also 8BV2, 8CBR, 8CBS, 8CBT, 8CBU.
PDB: 8A1Q, HIV-1 Integrase catalytic core domain and C-terminal domain with allosteric integrase inhibitor STP0404 (Pirmitegravir) (Singer et al, 2023). See also 8A1P.
PDB: 7R7P, Immature HIV-1 CACTD-SP1 lattice with Bevirimat (BVM) and Inositol hexakisphosphate (IP6) by Magic-Angle Spinning NMR (Sarkar et al, 2023). See also 7R7Q and BRMB entries 30929 and 30930.
PDB: 7RIK, Magic-Angle-Spinning NMR structure of Kinesin-1 motor domain assembled with microtubules (Zhang et al, 2022).
PDB: 7SD4, SARS-CoV-2 Nucleocapsid N-terminal domain (N-NTD) protein (Sarkar et al, 2022).
EMDB-13423, The cryoEM density map of hexamer from PFO perforated VLPs in presence of IP6 (Ni et al, 2021). See also EMDB-12454
PDB: 6XQJ, Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A (Byeon et al., 2021). See also 6XQI
PDB: 7ASL, HIV-1 Gag immature lattice. GagSP1T8I (Mendonca, et al 2021). See also 7ASH, 7ASL, EMD 12287.
PDB: 6ZDJ, Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,10) (Ni et al, 2020) See also 6SKK, 6SKM, 6SKN, 6SLQ, 6SLU, 6SMU, 6Y9V, 6Y9W, 6Y9X, 6Y9Y, 6Y9Z, 6YJ5, EMD-11176.
PDB: 6X63, Atomic-Resolution Structure of HIV-1 Capsid Tubes by Magic Angle Spinning NMR (Lu et al., 2020). See also 6WAP.
EMD-10277, Cryo-EM structure of human SERINC5 in LMNG micelles, bound to Fab.  (Pye et al., 2020).
PDB: 6SP2 CryoEM structure of SERINC from Drosophila melanogaster (Pye et al., 2020). See also EMD-10279.
EMD-10041, SIVrcm intasome (Cook et al, 2020). See also: EMDB 10042, 10043, and 10044.
PDB ID: 6RWL, SIVrcm intasome (Cook et al, 2020).     See also: 6RWM (with bictegravir), 6RWN (with dolutegravir), 6RWO (with INSTI resistance mutations Q148H/G140S in complex with bictegravir).
PDB ID: 6OBH Structure of HIV-1 CA 1/2-hexamer (Summers et al, 2019).     See also: 6OMT (R18D hexamer), 6MQA (P207S hexamer), 6MQO (G208R hexamer), 6MQP (T210K hexamer), 6EC2 (1/3-hexamerEE), 6ECN (1/2-hexamerEE-ΔCTD), 6ECO (hexamer-2foldon)
EMD-8986, A 3.1 Angstrom sub-tomogram average of HIV-1 CA-SP1. (Himes and Zhang, 2018).
PDB ID: 6GX9, Crystal structure of the TNPO3 – CPSF6 RSLD complex (Jang et al., 2019).
PDB ID: 6OIY, Structure of Escherichia coli bound to dGTP (Barnes et al., 2019). Also see 6OIW and 6OIX.
PDB ID: 6DI7, Vps1 GTPase-BSE fusion complexed with GDP (Varlakhanova et al., 2018). Also see 6DEF, 6DJQ and EMD-7874.
PDB ID: 5UOT, Cryo-EM structure of the helical assembly of full length MxB (Alvarez et al, 2017). Also see EMDB-8577)
PDB ID: 5UP4, Structure of the HIV-1 Capsid Protein and spacer peptide 1 by Cryo-EM (Wang et al, 2017). Also see EMDB-8582.
EMD-8582, Structure of the HIV-1 Capsid Protein and spacer peptide 1 by Cryo-EM (Wang et al, 2017). Also see PDB ID: 5UP4.
PDB ID: 5MLU, Crystal structure of the PFV GAG CBS bound to a mononucleosome (Lesbats et al, 2017). Also see NCBI GEO entry GSE97973
PDB ID: 5MOR, Cryo-EM reconstruction of the maedi-visna virus (MVV) strand transfer complex (Ballandras-Colas et al, 2017). Also see: 5LLJ, 5M0Q, 5T3A, and EMD-4138
EMD-8404, Single particle helical reconstruction of protease cleavage product from HIV-1 Gag VLPs (Ning et al, 2016). Also see: EMD-8403
PDB ID: 5T82, HIV-1 reverse transcriptase thumb subdomain (Sharaf et al, 2016). Also see: BioMagResBank entry 30171
PDB ID: 5JK7, The X-ray structure of the DDB1-DCAF1-Vpr-UNG2 complex (Wu et al, 2016).
PDB ID: 2NBQ, NMR Structure of the C-Terminal Domain of human APOBEC3B (Byeon et al, 2016). Also see: BioMagResBank entry 25985
PDB ID: 5CZ2, Crystal structure of a two-domain fragment of MMTV integrase (Ballandras-Colas et al, 2016). Also see: 5CZ1 and 5D7U.
PDB ID: 5FJB, Cyclophilin A Stabilize HIV-1 Capsid through a novel non- canonical binding site (Liu et al, 2016). Also see: EMDB-3075.
PDB ID: 4Z8L, Crystal structure of DCAF1/SIV-MND VPX/MND SAMHD1 NTD ternary complex (Wu et al, 2015)
PDB ID: 4U5W, Crystal structure of HIV-1 Nef-SF2 core domain in complex with the Src family kinase Hck SH3-SH2 tandem regulatory domains (Alvarado et al, 2014)
PDB ID: 4QFX, Crystal structure of the tetrameric dGTP/dATP-bound SAMHD1 (RN206) mutant catalytic core (Koharudin et al, 2014). Also see: 4QFY, 4QFZ, 4QG0, 4QG1, 4QG2, and 4QG4.
PDB ID: 4WHJ, Myxovirus Resistance Protein 2 (MxB) (Fribourgh et al, 2014)
PDB ID: 4C0Q, Transportin 3 in complex with Ran(Q69L)GTP (Maertens et al, 2014). Also see 4C0P, Unliganded Transportin 3
PDB ID: 4C0O, Transportin 3 in complex with phosphorylated ASF/SF2(Maertens et al, 2014)
PDB ID: 4BZC, Crystal structure of the tetrameric dGTP-bound wild type SAMHD1 catalytic core (Ji et al, 2013). Also see 4BZB, Crystal structure of the tetrameric dGTP-bound SAMHD1 mutant catalytic core
PDB ID: 3J3Q, Atomic-level structure of the entire HIV-1 capsid (Zhao et al, 2013). Also see 3J3Y, 3J34, EMD-5582, and EMD-5639.
EMDB Entry: EMD-5523, Reconstruction of CA in HIV-1 CA-SP1-NC assembly (Meng et al, 2012)
PDB ID: 2M65, NMR structure of human restriction factor APOBEC3A (Byeon et al, 2013)
PDB ID: 4e5z, Crystal structure of DNA damage-binding protein 1 (Yeh et al, 2012)
PDB ID: 4B3N,Crystal structure of rhesus TRIM5alpha PRY/SPRY domain (Yang et al, 2012)
 PDB ID: 3NTE,Crystal Structure of the Wild-type Full-Length HIV-1 Capsid Protein (Du et al, 2010)
PDB ID: 3NHN, Crystal structure of Hck regulatory region (Alvarado et al, 2010)
PDB: 2KOD, Solution NMR structure of dimeric HIV-1 capsid protein C-terminal domain (Byeon et al, 2009)
EMD-5136, cryoEM map of HIV-1 capsid in a helical tubular assembly (Byeon et al, 2009)